Introduction

The platform requires the transcriptomics and proteomics data to be in a structured format as an input. The easiest way is to prepare two csv files: counts.csv, samples.csv and an optional contrast.csv. When these files are ready, users can upload them direcly in Omics Playground.

Input file requirements

1. Counts file Count or expression .csv file with gene on rows, samples as columns.

2. Samples file Samples .csv file with samples on rows, phenotypes as columns.

3. Contrasts file Contrast .csv file with samples on rows, conditions as columns. (optional)

See also

If you have raw file formats, such as FASTQ files or LC-MS proteomics data (mzML, RAW, WIFF…), check our tutorials on how to prepare the counts matrix from these raw formats: data preparation examples.